Best Payroll Software in India With Attendance and Leave Management

Best Payroll Software in India With Attendance and Leave Management

Picture this: Your employee works from home, marks attendance on a messy Excel sheet, takes unrecorded time off, and you only discover the discrepancy when the salary hits their account. Now multiply that by 50 employees. Suddenly, your “simple” payroll process has become a monthly nightmare of reconciliations, missed leaves, and unhappy team members.


For Indian businesses, the challenge is even steeper. With PF, ESI, Professional Tax, and TDS compliance already demanding attention, adding manual attendance and leave tracking to the mix is a recipe for errors and penalties.


The solution? Payroll software that seamlessly integrates attendance and leave management—so every present day, every paid leave, and every absence automatically flows into the salary calculation.


Here are the best payroll software in India that get this integration right.


What to Look For in Attendance & Leave-Integrated Payroll Software


Before we dive into the list, here’s what truly matters when you evaluate payroll software India:


  1. Biometric / Mobile integration – Employees can punch in via fingerprint, facial recognition, or GPS.
  2. Leave policy customisation – Earned leave, sick leave, casual leave, and state-specific holidays configured without IT support.
  3. Real-time sync with payroll – Late marks, half-days, and unpaid leaves automatically adjust the monthly salary.
  4. Employee self-service portal – Staff check balances, apply for leave, and download payslips without HR intervention.
  5. Multi-state support – Different holiday calendars and professional tax slabs for teams working across multiple states.

Now, let’s look at the platforms that deliver all this—and more.


Best Payroll Software in India with Attendance and Leave Management


1. Keka – Best for User Experience & Gamified Attendance


Keka has become a favourite among modern Indian businesses for its beautiful interface and deep integration between attendance and payroll.


Their attendance management system captures time anywhere, schedules shifts, and tracks overtime—all fully integrated with payroll. Employees mark attendance via a selfie that matches against the database.


The leave system handles every type—paid, unpaid, sick, statutory—and payroll automatically adjusts for Loss of Pay (LOP) days. With real-time integration for 200+ biometric devices, Keka eliminates manual data entry.


  1. Best for: Tech startups and modern SMBs
  2. Pricing: Starts at ₹6,999/month for up to 100 employees

2. greytHR – Best for Statutory Compliance & Large Workforces


greytHR is one of the most trusted online payroll software platforms in India, serving over 30,000 companies. Their “mobile-first” Employee Self-Service portal allows employees to access payslips, manage leaves, and submit expense claims from anywhere. Managers can mark attendance for their team using facial recognition or selfies. GreytHR stores employee records, attendance, and payroll data in one place, and its payroll module is fully compliant with Indian labour laws, automatically handling PF, ESI, TDS, and other statutory filings.


  1. Best for: Mid-sized to large enterprises with complex compliance needs
  2. Pricing: Starts at ₹3,495/month for up to 50 employees

3. TankhaPay – Best All-in-One HRMS with Managed Services


TankhaPay is a powerful, mobile-first HRMS and workforce management platform designed for businesses of all sizes—from MSMEs and startups to large enterprises.


What makes it truly unique is that it doesn’t stop at software. Built on 26+ years of expertise from Akal Information Systems and trusted by over 1,000 organisations, TankhaPay offers:


  1. Integrated attendance tracking with face punch, geo-fencing, and live location
  2. Automated payroll linked directly to attendance and leave data
  3. Employee Self-Service portal where staff view payslips, track leave balances, and submit requests
  4. Statutory compliance including automated ESI/PF challans, ECR reports, and TDS calculations
  5. Multi-state support with different holiday calendars and shift schedules

Where TankhaPay truly stands out is its managed services layer—Employer of Record (EOR) for hiring without setting up a legal entity, Apprentice Management under the Government’s NATS scheme, and expert HR support embedded into your operations. This means you get not just software, but a team that handles compliance and payroll alongside the technology.


  1. Best for: Any industry—manufacturing, IT, healthcare, telecom, government, and more
  2. Pricing: T-Pay Core plan starts at just ₹40 per user per month

4. Zoho Payroll – Best for Businesses Already in the Zoho Ecosystem


Zoho Payroll now includes a dedicated Leave and Attendance (India) module, centralising leave and attendance tracking with compliance to Indian labour laws.


When paired with Zoho People, attendance data flows directly into payroll—geo-fencing and biometric integration feed every hour and leave request into salary calculations. Employees can check in/out, view attendance summaries, and manage absences directly through the system.


  1. Best for: Companies already using Zoho Books, Zoho People, or other Zoho products
  2. Pricing: Starts at ₹60/user/month; Zoho People costs extra

5. RazorpayX Payroll – Best for Startups & Simplicity


RazorpayX Payroll offers a clean, intuitive interface that makes attendance and leave management effortless. Employees can check in and out via the dashboard, apply for leave (even in bulk), and managers receive notifications for approvals.


Since the leave system is directly integrated with payroll, all leaves are automatically factored into salary calculations, eliminating errors. Slack integration allows employees to apply for leave or check holidays without leaving their chat tool.


  1. Best for: Startups and small teams looking for a no-fuss solution
  2. Pricing: Free starter tier; paid plans available

6. Pocket HRMS – Best for AI-Powered Automation on a Budget


Pocket HRMS brings AI-powered automation to attendance and leave management at a highly competitive price. Their mobile app allows employees to capture attendance with a selfie + GPS location, making it foolproof.


The smHRty AI chatbot interacts with employees to apply for leaves, answer queries, and provide HR assistance 24/7. All attendance and leave data flows directly into payroll processing.


  1. Best for: Budget-conscious SMBs wanting AI features without enterprise pricing
  2. Pricing: Standard plan starts at ₹2,995/month for 50 employees; Professional plan at ₹4,495/month

Quick Comparison Table


Software

Best For

Attendance Integration

Leave Management

Starting Price (approx.)

Keka

UX-focused SMBs

Biometric + Selfie

Fully configurable

₹6,999/mo (100 emp)

greytHR

Compliance-heavy enterprises

Facial recognition + Mobile

Centralised

₹3,495/mo (50 emp)

TankhaPay

All-in-one HRMS + Managed Services

Face punch + Geo-fencing + Live location

Policy customisation

₹40/user/mo

Zoho Payroll

Zoho ecosystem users

Zoho People integration

Integrated module

₹60/user/mo

RazorpayX Payroll

Startups

Dashboard + Biometric

Slack-integrated

Free starter tier

Pocket HRMS

Budget AI-driven SMBs

Selfie + GPS + Chatbot

AI chatbot enabled

₹2,995/mo (50 emp)


Read: Remote Payroll Software Development for Growing Employee 


How to Choose the Right One for Your Business


  1. Start with your employee count – Per-user pricing favours small teams; flat monthly fees work better as you grow.
  2. Check your attendance collection method – Do you have biometric devices? Will employees mark attendance via mobile? Make sure the software supports your infrastructure.
  3. List your leave policies – If you have complex rules (carry-forward limits, pro-rated leave for mid-year joiners), choose a platform with deep customisation.
  4. Evaluate statutory needs – Businesses with multi-state teams need automatic PT slab application and state-specific holiday calendars.
  5. Try before you buy – Most vendors offer demos or free trials. Use them to test attendance → payroll sync end-to-end.

Final Thoughts


The best payroll software in India is no longer just about calculating salaries. It is about creating a seamless bridge between when people work and how they get paid.


Whether you choose Keka for its beautiful interface, greytHR for its compliance depth, TankhaPay for its all-in-one HRMS plus managed services, Zoho for ecosystem synergy, RazorpayX for startup simplicity, or Pocket HRMS for AI-powered affordability—the key is integration.


Stop reconciling attendance sheets. Start automating payroll.